#################################### ### Log file for DDRP v2 ### #################################### BASE DIR: /data/PRISM/ WORKING DIR: /data/PRISM/2012 EXISTING OUTPUT DIR: /home/httpd/html/dodtmp/GCA_test; removing all files PARAMETER AND SETTINGS SETUP: getting parameters to use in model Species params: /usr/local/dds/DDRP_DOD/ddrp_v2/spp_params/GCA.params Reading params for species: GCA Fullname: Neogalerucella calmariensis METADATA: creating metadata file for all inputs used in model Done writing metadata file PRISM DATA PROCESSING Finished loading PRISM files for 365 days Creating template file for OR Cropping tmax and tmin tiles for OR Done processing PRISM data DAILY LOOP Sampling every 61 days between 20120101 and 20121231 Running daily loop for cohorts 1 2 3 4 5 Daily loop done (run time = 0.52 min) FINAL ANALYSES AND MAP PRODUCTION ### SUMMARY MAPS: DDTOTAL ### Saving summary map: Misc_output/DDtotal_20120302.png - Number of accumulated degree-days on 03/02/2012 Saving summary map: Misc_output/DDtotal_20120901.png - Number of accumulated degree-days on 09/01/2012 Saving summary map: Misc_output/DDtotal_20121101.png - Number of accumulated degree-days on 11/01/2012 Saving summary map: Misc_output/DDtotal_20121231.png - Number of accumulated degree-days on 12/31/2012 Saving summary map: Misc_output/DDtotal_20120502.png - Number of accumulated degree-days on 05/02/2012 Saving summary map: Misc_output/DDtotal_20120702.png - Number of accumulated degree-days on 07/02/2012 Done with DDtotal maps ### RASTER AND SUMMARY MAP OUTPUTS: STAGE COUNT ### Saving summary map: StageCount_20120302.png - Stage count on 03/02/2012 Saving summary map: StageCount_20120502.png - Stage count on 05/02/2012 Saving summary map: StageCount_20120702.png - Stage count on 07/02/2012 Saving summary map: StageCount_20121101.png - Stage count on 11/01/2012 Saving summary map: StageCount_20121231.png - Stage count on 12/31/2012 Saving summary map: StageCount_20120901.png - Stage count on 09/01/2012 Done with raster and summary map outputs for StageCount ### RASTER AND SUMMARY MAP OUTPUTS: PEST EVENT MAPS ### Saving raster: Avg_PEMp2_20121231.tif - Avg. date of 2nd gen. adult emergence Saving raster: Avg_PEMp1_20121231.tif - Avg. date of 1st gen. adult emergence Saving raster: Avg_PEMl2_20121231.tif - Avg. date of 2nd gen. larval development Saving raster: Avg_PEMe2_20121231.tif - Avg. date of 2nd gen. egg hatch Saving raster: Avg_PEMl1_20121231.tif - Avg. date of 1st gen. larval development Saving raster: Avg_PEMa1_20121231.tif - Avg. date of 1st gen. egg laying Saving raster: Avg_PEMa0_20121231.tif - Avg. date of OW gen. Adult emerges (pre-oviposition) Saving raster: Avg_PEMe1_20121231.tif - Avg. date of 1st gen. egg hatch Saving raster: Avg_PEMa2_20121231.tif - Avg. date of 2nd gen. egg laying Saving summary map: Avg_PEMp2_20121231.png - Avg. date of 2nd gen. adult emergence Saving raster: Earliest_PEMp2_20121231.tif - Earliest date of 2nd gen. adult emergence Saving summary map: Avg_PEMl2_20121231.png - Avg. date of 2nd gen. larval development Saving summary map: Avg_PEMa2_20121231.png - Avg. date of 2nd gen. egg laying Saving summary map: Avg_PEMe2_20121231.png - Avg. date of 2nd gen. egg hatch Saving summary map: Avg_PEMp1_20121231.png - Avg. date of 1st gen. adult emergence Saving raster: Earliest_PEMl2_20121231.tif - Earliest date of 2nd gen. larval development Saving summary map: Avg_PEMa1_20121231.png - Avg. date of 1st gen. egg laying Saving summary map: Avg_PEMl1_20121231.png - Avg. date of 1st gen. larval development Saving raster: Earliest_PEMa2_20121231.tif - Earliest date of 2nd gen. egg laying Saving summary map: Avg_PEMe1_20121231.png - Avg. date of 1st gen. egg hatch Saving raster: Earliest_PEMe2_20121231.tif - Earliest date of 2nd gen. egg hatch Saving summary map: Avg_PEMa0_20121231.png - Avg. date of OW gen. Adult emerges (pre-oviposition) Saving raster: Earliest_PEMl1_20121231.tif - Earliest date of 1st gen. larval development Saving raster: Earliest_PEMp1_20121231.tif - Earliest date of 1st gen. adult emergence Saving raster: Earliest_PEMa1_20121231.tif - Earliest date of 1st gen. egg laying Saving raster: Earliest_PEMe1_20121231.tif - Earliest date of 1st gen. egg hatch Saving raster: Earliest_PEMa0_20121231.tif - Earliest date of OW gen. Adult emerges (pre-oviposition) Saving summary map: Earliest_PEMp2_20121231.png - Earliest date of 2nd gen. adult emergence Saving summary map: Earliest_PEMa2_20121231.png - Earliest date of 2nd gen. egg laying Saving summary map: Earliest_PEMl2_20121231.png - Earliest date of 2nd gen. larval development Saving summary map: Earliest_PEMe2_20121231.png - Earliest date of 2nd gen. egg hatch Saving summary map: Earliest_PEMp1_20121231.png - Earliest date of 1st gen. adult emergence Saving summary map: Earliest_PEMl1_20121231.png - Earliest date of 1st gen. larval development Saving summary map: Earliest_PEMe1_20121231.png - Earliest date of 1st gen. egg hatch Saving summary map: Earliest_PEMa1_20121231.png - Earliest date of 1st gen. egg laying Saving summary map: Earliest_PEMa0_20121231.png - Earliest date of OW gen. Adult emerges (pre-oviposition) Done with Pest Event Maps ### WEIGHTED RASTER AND SUMMARY MAP OUTPUTS: LIFESTAGE ### Stages: OA, E, L, P, A Saving raster brick: Misc_output/OWadult.tif - OWadult relative pop. size for all 6 dates Saving raster brick: Misc_output/Egg.tif - Egg relative pop. size for all 6 dates Saving raster brick: Misc_output/Larvae.tif - Larvae relative pop. size for all 6 dates Saving raster brick: Misc_output/Pupae.tif - Pupae relative pop. size for all 6 dates Saving raster brick: Misc_output/Adult.tif - Adult relative pop. size for 6 dates Saving summary map: Misc_output/Egg_20120302.png - Egg relative pop. size on 03/02/2012 Saving summary map: Misc_output/Larvae_20120302.png - Larvae relative pop. size on 03/02/2012 Saving summary map: Misc_output/Pupae_20120302.png - Pupae relative pop. size on 03/02/2012 Saving summary map: Misc_output/OWadult_20120302.png - OWadult relative pop. size on 03/02/2012 Saving summary map: Misc_output/Adult_20120302.png - Adult relative pop. size on 03/02/2012 Saving summary map: Misc_output/Egg_20120502.png - Egg relative pop. size on 05/02/2012 Saving summary map: Misc_output/Larvae_20120502.png - Larvae relative pop. size on 05/02/2012 Saving summary map: Misc_output/Pupae_20120502.png - Pupae relative pop. size on 05/02/2012 Saving summary map: Misc_output/OWadult_20120502.png - OWadult relative pop. size on 05/02/2012 Saving summary map: Misc_output/Egg_20120702.png - Egg relative pop. size on 07/02/2012 Saving summary map: Misc_output/Larvae_20120702.png - Larvae relative pop. size on 07/02/2012 Saving summary map: Misc_output/Pupae_20120702.png - Pupae relative pop. size on 07/02/2012 Saving summary map: Misc_output/Adult_20120502.png - Adult relative pop. size on 05/02/2012 Saving summary map: Misc_output/OWadult_20120702.png - OWadult relative pop. size on 07/02/2012 Saving summary map: Misc_output/Egg_20120901.png - Egg relative pop. size on 09/01/2012 Saving summary map: Misc_output/Larvae_20120901.png - Larvae relative pop. size on 09/01/2012 Saving summary map: Misc_output/Pupae_20120901.png - Pupae relative pop. size on 09/01/2012 Saving summary map: Misc_output/Adult_20120702.png - Adult relative pop. size on 07/02/2012 Saving summary map: Misc_output/OWadult_20120901.png - OWadult relative pop. size on 09/01/2012 Saving summary map: Misc_output/Larvae_20121101.png - Larvae relative pop. size on 11/01/2012 Saving summary map: Misc_output/Egg_20121101.png - Egg relative pop. size on 11/01/2012 Saving summary map: Misc_output/Pupae_20121101.png - Pupae relative pop. size on 11/01/2012 Saving summary map: Misc_output/Adult_20120901.png - Adult relative pop. size on 09/01/2012 Saving summary map: Misc_output/OWadult_20121101.png - OWadult relative pop. size on 11/01/2012 Saving summary map: Misc_output/Larvae_20121231.png - Larvae relative pop. size on 12/31/2012 Saving summary map: Misc_output/Egg_20121231.png - Egg relative pop. size on 12/31/2012 Saving summary map: Misc_output/Pupae_20121231.png - Pupae relative pop. size on 12/31/2012 Saving summary map: Misc_output/Adult_20121101.png - Adult relative pop. size on 11/01/2012 Saving summary map: Misc_output/OWadult_20121231.png - OWadult relative pop. size on 12/31/2012 Saving summary map: Misc_output/Adult_20121231.png - Adult relative pop. size on 12/31/2012 Done with weighted raster summary map outputs for Lifestage ### WEIGHTED RASTER OUTPUT: NUMGEN ### Saving raster brick: Gen_0_cohort3.tif - Gen. 0 for all 6 dates Saving raster brick: Gen_0_cohort4.tif - Gen. 0 for all 6 dates Saving raster brick: Gen_0_cohort1.tif - Gen. 0 for all 6 dates Saving raster brick: Gen_0_cohort2.tif - Gen. 0 for all 6 dates Saving raster brick: Gen_1_cohort1.tif - Gen. 1 for all 6 dates Saving raster brick: Gen_0_cohort5.tif - Gen. 0 for all 6 dates Saving raster brick: Gen_1_cohort2.tif - Gen. 1 for all 6 dates Saving raster brick: Gen_1_cohort3.tif - Gen. 1 for all 6 dates Saving raster brick: Gen_1_cohort4.tif - Gen. 1 for all 6 dates Saving raster brick: Gen_1_cohort5.tif - Gen. 1 for all 6 dates Saving raster brick: Gen_2_cohort1.tif - Gen. 2 for all 6 dates Saving raster brick: Gen_2_cohort2.tif - Gen. 2 for all 6 dates Saving raster brick: Gen_2_cohort4.tif - Gen. 2 for all 6 dates Saving raster brick: Gen_2_cohort3.tif - Gen. 2 for all 6 dates Saving raster brick: Gen_3_cohort1.tif - Gen. 3 for all 6 dates Saving raster brick: Gen_2_cohort5.tif - Gen. 2 for all 6 dates Saving raster brick: Gen_3_cohort2.tif - Gen. 3 for all 6 dates Saving raster brick: Gen_3_cohort3.tif - Gen. 3 for all 6 dates Saving raster brick: Gen_3_cohort4.tif - Gen. 3 for all 6 dates Saving raster brick: Gen_3_cohort5.tif - Gen. 3 for all 6 dates Saving raster brick: Gen_4_cohort1.tif - Gen. 4 for all 6 dates Saving raster brick: Gen_4_cohort2.tif - Gen. 4 for all 6 dates Saving raster brick: Gen_4_cohort3.tif - Gen. 4 for all 6 dates Saving raster brick: Gen_4_cohort4.tif - Gen. 4 for all 6 dates Saving raster brick: Gen_4_cohort5.tif - Gen. 4 for all 6 dates Saving raster brick: Misc_output/Gen_3.tif - Gen. 3 for all 6 dates Saving raster brick: Misc_output/Gen_4.tif - Gen. 4 for all 6 dates Saving raster brick: Misc_output/Gen_2.tif - Gen. 2 for all 6 dates Saving raster brick: Misc_output/Gen_0.tif - Gen. 0 for all 6 dates Saving raster brick: Misc_output/Gen_1.tif - Gen. 1 for all 6 dates Done with weighted raster outputs for NumGen ### SUMMARY MAP OUTPUT: NUMGEN ### Saving summary map: NumGen_20120502.png - Numbers of generations on 05/02/2012 Saving summary map: NumGen_20120302.png - Numbers of generations on 03/02/2012 Saving summary map: NumGen_20120901.png - Numbers of generations on 09/01/2012 Saving summary map: NumGen_20121101.png - Numbers of generations on 11/01/2012 Saving summary map: NumGen_20120702.png - Numbers of generations on 07/02/2012 Saving summary map: NumGen_20121231.png - Numbers of generations on 12/31/2012 Done with summary maps for NumGen ### ANALYSIS: LIFESTAGE WITH NUMBER OF GENS. ### Saving raster brick: Mismatch_cohort3.tif Mismatch Saving raster brick: Mismatch_cohort2.tif Mismatch Saving raster brick: Mismatch_cohort1.tif Mismatch Saving raster brick: Mismatch_cohort4.tif Mismatch Saving raster brick: Mismatch_cohort5.tif Mismatch Saving raster brick: Diapause_all_weighted.tif Saving raster brick: FullVolt_all_weighted.tif Saving raster brick: AttVolt_all_weighted.tif Saving raster brick: Mismatch_all_weighted.tif ### SUMMARY MAP OUTPUT - Diapause ### Replacing older generation vals with newer gen. vals in areas of overlap Done Assigning a generation number to pixels in the Adult raster brick Done ### SUMMARY MAP OUTPUT: LIFESTAGE W/ NO. OF GENS. ### Saving summary map: Misc_output/Adult_byGen_20120302.png - Relative pop. size of adults for each gen. on 03/02/2012 Saving summary map: Misc_output/Adult_byGen_20120502.png - Relative pop. size of adults for each gen. on 05/02/2012 Saving summary map: Misc_output/Adult_byGen_20121101.png - Relative pop. size of adults for each gen. on 11/01/2012 Saving summary map: Misc_output/Adult_byGen_20120901.png - Relative pop. size of adults for each gen. on 09/01/2012 Saving summary map: Misc_output/Adult_byGen_20120702.png - Relative pop. size of adults for each gen. on 07/02/2012 Saving summary map: Misc_output/Adult_byGen_20121231.png - Relative pop. size of adults for each gen. on 12/31/2012 Done with Lifestage with NumGen summary maps ### Done w/ final analyses and map production ### Run time for analyses and map production = 2.44 min Deleting, renaming, and moving miscellaneous files Renamed all final PNG files to include GCA in file name MODEL RUN DONE Run time for entire model = 3.39 min