#################################### ### Log file for DDRP cohorts v1 ### #################################### BASE DIR: /data/PRISM/ WORKING DIR: /data/PRISM/2018 EXISTING OUTPUT DIR: /home/httpd/html/dodtmp/GCA_2018; removing all files PARAMETER AND SETTINGS SETUP: getting parameters to use in model Species params: /usr/local/dds/DDRP_DOD/spp_params/GCA.params Reading params for species: GCA Fullname: Galerucella calmariensis 2018 is not a leap year - ignoring 'keep_leap' parameter METADATA: creating metadata file for all inputs used in model Done writing metafile PRISM DATA PROCESSING Finished loading PRISM files for 365 days Creating template file for NORTHWEST Cropping tmax and tmin tiles for NORTHWEST Done processing PRISM data DAILY LOOP Sampling every 30 days between 20180101 and 20181230 Running daily loop for cohorts 1 2 3 4 5 Running daily loop for cohorts 6 7 Daily loop done (run time = 1.14 min) FINAL ANALYSES AND MAP PRODUCTION ### SUMMARY MAPS: DDTOTAL ###Could not create plot for Misc_output/DDtotal_20180130.png Could not create plot for Misc_output/DDtotal_20180529.png Could not create plot for Misc_output/DDtotal_20180926.png Could not create plot for Misc_output/DDtotal_20181230.png Could not create plot for Misc_output/DDtotal_20180229.png Could not create plot for Misc_output/DDtotal_20180628.png Could not create plot for Misc_output/DDtotal_20180330.png Could not create plot for Misc_output/DDtotal_20180728.png Could not create plot for Misc_output/DDtotal_20181026.png Could not create plot for Misc_output/DDtotal_20180827.png Could not create plot for Misc_output/DDtotal_20180429.png Could not create plot for Misc_output/DDtotal_20181125.png Could not create plot for Misc_output/DDtotal_20181225.png Done with DDtotal maps ### SUMMARY MAPS AND WEIGHTED RASTER OUTPUT: LIFESTAGE ### Stages: OA, E, L, P, A Saving raster brick: Misc_output/Larvae.tif - Larvae relative pop. size for all 13 dates Saving raster brick: Misc_output/OWadult.tif - OWadult relative pop. size for all 13 datesCould not create plot for Misc_output/Larvae_20180130.png Could not create plot for Misc_output/Larvae_20180229.png Saving raster brick: Misc_output/Pupae.tif - Pupae relative pop. size for all 13 datesCould not create plot for Misc_output/OWadult_20180130.png Could not create plot for Misc_output/OWadult_20180229.png Could not create plot for Misc_output/Larvae_20180330.png Saving raster brick: Misc_output/Egg.tif - Egg relative pop. size for all 13 datesCould not create plot for Misc_output/Larvae_20180429.png Could not create plot for Misc_output/Larvae_20180529.png Could not create plot for Misc_output/OWadult_20180330.png Could not create plot for Misc_output/OWadult_20180429.png Could not create plot for Could not create plot for Misc_output/PupaeMisc_output/Pupae__2018033020180130.png .png Could not create plot for Misc_output/OWadult_20180529.png Could not create plot for Misc_output/Pupae_20180229.png Could not create plot for Misc_output/Larvae_20180728.png Could not create plot for Misc_output/Larvae_20180827.png Could not create plot for Misc_output/Larvae_20180628.png Could not create plot for Misc_output/OWadult_20180728.png Could not create plot for Misc_output/OWadult_20180628.png Could not create plot for Misc_output/OWadult_20180827.png Could not create plot for Misc_output/Egg_20180130.png Could not create plot for Misc_output/Egg_20180229.png Could not create plot for Misc_output/Pupae_20180628.png Could not create plot for Misc_output/Egg_20180330.png Could not create plot for Misc_output/Larvae_20181026.png Could not create plot for Misc_output/Pupae_20180429.png Could not create plot for Misc_output/Larvae_20181125.png Could not create plot for Misc_output/Pupae_20180529.png Could not create plot for Misc_output/Larvae_20180926.png Could not create plot for Misc_output/OWadult_20181026.png Could not create plot for Misc_output/OWadult_20181125.png Could not create plot for Misc_output/OWadult_20180926.png Could not create plot for Misc_output/Egg_20180529.png Could not create plot for Misc_output/Pupae_20180926.png Could not create plot for Misc_output/Larvae_20181230.png Could not create plot for Misc_output/Egg_20180628.png Could not create plot for Misc_output/Egg_20180429.png Could not create plot for Misc_output/Pupae_20180728.png Could not create plot for Misc_output/OWadult_20181230.png Could not create plot for Misc_output/Larvae_20181225.png Could not create plot for Misc_output/Pupae_20180827.png Could not create plot for Misc_output/OWadult_20181225.png Could not create plot for Misc_output/Egg_20180827.png Could not create plot for Misc_output/Pupae_20181225.png Could not create plot for Misc_output/Egg_20180926.png Could not create plot for Misc_output/Pupae_20181026.png Could not create plot for Misc_output/Egg_20180728.png Could not create plot for Misc_output/Pupae_20181125.png Could not create plot for Misc_output/Egg_20181125.png Could not create plot for Misc_output/Egg_20181225.png Could not create plot for Misc_output/Pupae_20181230.png Could not create plot for Misc_output/Egg_20181026.png Could not create plot for Misc_output/Egg_20181230.png Saving raster brick: Misc_output/Adult.tif - Adult relative pop. size for 13 datesCould not create plot for Misc_output/Adult_20180229.png Could not create plot for Misc_output/Adult_20180130.png Could not create plot for Misc_output/Adult_20180429.png Could not create plot for Misc_output/Adult_20180330.png Could not create plot for Misc_output/Adult_20180628.png Could not create plot for Misc_output/Adult_20180529.png Could not create plot for Misc_output/Adult_20180827.png Could not create plot for Misc_output/Adult_20180728.png Could not create plot for Misc_output/Adult_20181026.png Could not create plot for Misc_output/Adult_20180926.png Could not create plot for Misc_output/Adult_20181225.png Could not create plot for Misc_output/Adult_20181125.png Could not create plot for Misc_output/Adult_20181230.png Done with weighted raster outputs and summary maps for Lifestage ### WEIGHTED RASTER OUTPUT: NUMGEN FOR 8 GENERATIONS ### Saving raster brick: NumGen_6.tif - Gen. 6 for all 13 dates Saving raster brick: NumGen_3.tif - Gen. 3 for all 13 dates Saving raster brick: NumGen_8.tif - Gen. 8 for all 13 dates Saving raster brick: NumGen_4.tif - Gen. 4 for all 13 dates Saving raster brick: NumGen_2.tif - Gen. 2 for all 13 dates Saving raster brick: NumGen_7.tif - Gen. 7 for all 13 dates Saving raster brick: NumGen_0.tif - Gen. 0 for all 13 dates Saving raster brick: NumGen_1.tif - Gen. 1 for all 13 dates Saving raster brick: NumGen_5.tif - Gen. 5 for all 13 dates Done with weighted raster outputs for NumGen ### SUMMARY MAP OUTPUT: NUMGEN ###Could not create plot for NumGen_20180926.png Could not create plot for NumGen_20180130.png Could not create plot for NumGen_20180529.png Could not create plot for NumGen_20181230.png Could not create plot for NumGen_20181026.png Could not create plot for NumGen_20180229.png Could not create plot for NumGen_20180628.png Could not create plot for NumGen_20181125.png Could not create plot for NumGen_20180330.png Could not create plot for NumGen_20180728.png Could not create plot for NumGen_20181225.png Could not create plot for NumGen_20180429.png Could not create plot for NumGen_20180827.png Done with summary maps for NumGen ### ANALYSIS: LIFESTAGE WITH NUMBER OF GENS. ### Saving raster brick: Mismatch_cohort3.tif Mismatch Saving raster brick: Mismatch_cohort5.tif Mismatch Saving raster brick: Mismatch_cohort4.tif Mismatch Saving raster brick: Mismatch_cohort6.tif Mismatch Saving raster brick: Mismatch_cohort7.tif Mismatch Saving raster brick: Mismatch_cohort1.tif Mismatch Saving raster brick: Mismatch_cohort2.tif Mismatch Saving raster brick: AttVolt_all_weighted.tif Saving raster brick: FullGen_all_weighted.tif Saving raster brick: Mismatch_all_weighted.tif Saving raster brick: Diapause_all_weighted.tif ### SUMMARY MAP OUTPUT - Diapause ###