#################################### ### Log file for DDRP cohorts v1 ### #################################### BASE DIR: /data/PRISM/ WORKING DIR: /data/PRISM/2018 EXISTING OUTPUT DIR: /home/httpd/html/dodtmp/APH_test; removing all files PARAMETER AND SETTINGS SETUP: getting parameters to use in model Species params: /usr/local/dds/DDRP_DOD/spp_params/APH.params Reading params for species: APH Fullname: Aphalara itadori 2018 is not a leap year - ignoring 'keep_leap' parameter METADATA: creating metadata file for all inputs used in model Done writing metafile PRISM DATA PROCESSING Finished loading PRISM files for 365 days Creating template file for OR Cropping tmax and tmin tiles for OR Done processing PRISM data DAILY LOOP Sampling every 30 days between 20180101 and 20181231 Running daily loop for cohorts 1 2 3 4 5 Daily loop done (run time = 0.42 min) FINAL ANALYSES AND MAP PRODUCTION ### SUMMARY MAPS: DDTOTAL ###Could not create plot for Misc_output/DDtotal_20180130.png Could not create plot for Misc_output/DDtotal_20181231.png Could not create plot for Misc_output/DDtotal_20180530.png Could not create plot for Misc_output/DDtotal_20180927.png Could not create plot for Misc_output/DDtotal_20180629.png Could not create plot for Misc_output/DDtotal_20181027.png Could not create plot for Misc_output/DDtotal_20180301.png Could not create plot for Misc_output/DDtotal_20180729.png Could not create plot for Misc_output/DDtotal_20181126.png Could not create plot for Misc_output/DDtotal_20180828.png Could not create plot for Misc_output/DDtotal_20180331.png Could not create plot for Misc_output/DDtotal_20181226.png Could not create plot for Misc_output/DDtotal_20180430.png Done with DDtotal maps ### SUMMARY MAPS AND WEIGHTED RASTER OUTPUT: LIFESTAGE ### Stages: OA, E, L, P, A Saving raster brick: Misc_output/OWadult.tif - OWadult relative pop. size for all 13 dates Saving raster brick: Misc_output/Larvae.tif - Larvae relative pop. size for all 13 dates Saving raster brick: Misc_output/Egg.tif - Egg relative pop. size for all 13 dates Saving raster brick: Misc_output/Pupae.tif - Pupae relative pop. size for all 13 datesCould not create plot for Misc_output/OWadult_20180130.png Could not create plot for Misc_output/OWadult_20180331.png Could not create plot for Misc_output/OWadult_20180301.png Could not create plot for Misc_output/Larvae_20180301.png Could not create plot for Misc_output/Larvae_20180130.png Could not create plot for Misc_output/Egg_20180130.png Could not create plot for Misc_output/Egg_20180301.png Could not create plot for Misc_output/OWadult_20180430.png Could not create plot for Misc_output/OWadult_20180629.png Could not create plot for Misc_output/Larvae_20180331.png Could not create plot for Misc_output/OWadult_20180530.png Could not create plot for Misc_output/Pupae_20180130.png Could not create plot for Misc_output/Pupae_20180331.png Could not create plot for Misc_output/Egg_20180530.png Could not create plot for Misc_output/Egg_20180331.png Could not create plot for Misc_output/Larvae_20180430.png Could not create plot for Misc_output/Pupae_20180301.png Could not create plot for Misc_output/OWadult_20180729Could not create plot for .png Misc_output/OWadult_20180927.png Could not create plot for Misc_output/Larvae_20180629.png Could not create plot for Misc_output/Egg_20180430.png Could not create plot for Misc_output/Larvae_20180530.png Could not create plot for Misc_output/OWadult_20180828.png Could not create plot for Misc_output/Pupae_20180430.png Could not create plot for Misc_output/Egg_20180828.png Could not create plot for Misc_output/Egg_20180629.png Could not create plot for Misc_output/Larvae_20180729.png Could not create plot for Misc_output/OWadult_20181027.png Could not create plot for Misc_output/OWadult_20181226.png Could not create plot for Misc_output/Pupae_20180629.png Could not create plot for Misc_output/OWadult_20181126.png Could not create plot for Misc_output/Larvae_20180927.png Could not create plot for Misc_output/Larvae_20180828.png Could not create plot for Misc_output/Egg_20180729.png Could not create plot for Misc_output/Pupae_20180530.png Could not create plot for Misc_output/Egg_20181126.png Could not create plot for Misc_output/Pupae_20180729.png Could not create plot for Misc_output/OWadult_20181231.png Could not create plot for Misc_output/Egg_20180927.png Could not create plot for Misc_output/Larvae_20181027.png Could not create plot for Misc_output/Egg_20181027.png Could not create plot for Misc_output/Pupae_20180927.png Could not create plot for Misc_output/Larvae_20181226.png Could not create plot for Misc_output/Larvae_20181126.png Could not create plot for Misc_output/Pupae_20180828.png Could not create plot for Misc_output/Pupae_20181027.png Could not create plot for Misc_output/Larvae_20181231.png Could not create plot for Misc_output/Egg_20181231.png Could not create plot for Misc_output/Egg_20181226.png Could not create plot for Misc_output/Pupae_20181226.png Could not create plot for Misc_output/Pupae_20181231.png Could not create plot for Misc_output/Pupae_20181126.png Saving raster brick: Misc_output/Adult.tif - Adult relative pop. size for 13 datesCould not create plot for Misc_output/Adult_20180130.png Could not create plot for Misc_output/Adult_20180301.png Could not create plot for Misc_output/Adult_20180331.png Could not create plot for Misc_output/Adult_20180430.png Could not create plot for Misc_output/Adult_20180530.png Could not create plot for Misc_output/Adult_20180629.png Could not create plot for Misc_output/Adult_20180729.png Could not create plot for Misc_output/Adult_20180828.png Could not create plot for Misc_output/Adult_20180927.png Could not create plot for Misc_output/Adult_20181027.png Could not create plot for Misc_output/Adult_20181126.png Could not create plot for Misc_output/Adult_20181226.png Could not create plot for Misc_output/Adult_20181231.png Done with summary maps for NumGen ### ANALYSIS: LIFESTAGE BY GENERATION ### Saving raster brick: Mismatch_cohort3.tif Mismatch Saving raster brick: Mismatch_cohort2.tif Mismatch Saving raster brick: Mismatch_cohort4.tif Mismatch Saving raster brick: Mismatch_cohort5.tif Mismatch Saving raster brick: Mismatch_cohort1.tif Mismatch Saving raster brick: AttVolt_all_weighted.tif Saving raster brick: Diapause_all_weighted.tif Saving raster brick: Mismatch_all_weighted.tif Saving raster brick: FullGen_all_weighted.tif ### SUMMARY MAP OUTPUT - Diapause ###