#################################### ### Log file for DDRP cohorts v1 ### #################################### BASE DIR: /data/PRISM/ WORKING DIR: /data/PRISM/2012 EXISTING OUTPUT DIR: /home/httpd/html/dodtmp/APHA_2012_NA; removing all files PARAMETER AND SETTINGS SETUP: getting parameters to use in model Species params: /usr/local/dds/DDRP_DOD/spp_params/APH.params Reading params for species: APH Fullname: Aphalara itadori 2012 is a leap year but leap day (2/29) will not be included in the model METADATA: creating metadata file for all inputs used in model Done writing metafile PRISM DATA PROCESSING Finished loading PRISM files for 365 days Creating template file for CONUSPLUS Splitting template into 4 tiles Cropping tmax and tmin tiles for CONUSPLUS Done processing PRISM data DAILY LOOP Sampling every 30 days between 20120101 and 20121230 Running daily loop for cohorts 1 2 Running daily loop for cohorts 3 4 Running daily loop for cohorts 5 6 Running daily loop for cohorts 7 Daily loop done (run time = 4.89 min) FINAL ANALYSES AND MAP PRODUCTION Merging tiles for CONUSPLUS Merged AttVolt tiles for cohort 1 Merged FullGen tiles for cohort 1 Merged FullGen tiles for cohort 2 Merged AttVolt tiles for cohort 2 Merged FullGen tiles for cohort 3 Merged AttVolt tiles for cohort 3 Merged FullGen tiles for cohort 4 Merged AttVolt tiles for cohort 4 Merged FullGen tiles for cohort 5 Merged AttVolt tiles for cohort 5 Merged FullGen tiles for cohort 6 Merged AttVolt tiles for cohort 6 Merged FullGen tiles for cohort 7 Merged AttVolt tiles for cohort 7 Merged Lifestage tiles for cohort 1 Merged DDtotal tiles for cohort 1 Merged Lifestage tiles for cohort 2 Merged Diapause tiles for cohort 1 Merged Lifestage tiles for cohort 3 Merged Diapause tiles for cohort 2 Merged Lifestage tiles for cohort 4 Merged Diapause tiles for cohort 3 Merged Lifestage tiles for cohort 5 Merged Diapause tiles for cohort 4 Merged Lifestage tiles for cohort 6 Merged Diapause tiles for cohort 5 Merged Lifestage tiles for cohort 7 Merged Diapause tiles for cohort 6 Merged NumGen tiles for cohort 1 Merged Diapause tiles for cohort 7 Merged NumGen tiles for cohort 2 Merged NumGen tiles for cohort 3 Merged NumGen tiles for cohort 4 Merged NumGen tiles for cohort 5 Merged NumGen tiles for cohort 6 Merged NumGen tiles for cohort 7 Done merging tiles Deleting tiles for CONUSPLUS Deleted tile files for AttVolt Deleted tile files for Diapause Deleted tile files for FullGen Deleted tile files for Lifestage Deleted tile files for NumGen Done deleting tile files ### SUMMARY MAPS: DDTOTAL ### Saving summary map: Misc_output/DDtotal_20120529.png - Number of accumulated degree-days on 05/29/2012 Saving summary map: Misc_output/DDtotal_20120926.png - Number of accumulated degree-days on 09/26/2012 Saving summary map: Misc_output/DDtotal_20121230.png - Number of accumulated degree-days on 12/30/2012 Saving summary map: Misc_output/DDtotal_20120130.png - Number of accumulated degree-days on 01/30/2012 Saving summary map: Misc_output/DDtotal_20121026.png - Number of accumulated degree-days on 10/26/2012 Saving summary map: Misc_output/DDtotal_20120229.png - Number of accumulated degree-days on 02/29/2012 Saving summary map: Misc_output/DDtotal_20120628.png - Number of accumulated degree-days on 06/28/2012 Saving summary map: Misc_output/DDtotal_20121125.png - Number of accumulated degree-days on 11/25/2012 Saving summary map: Misc_output/DDtotal_20120330.png - Number of accumulated degree-days on 03/30/2012 Saving summary map: Misc_output/DDtotal_20120728.png - Number of accumulated degree-days on 07/28/2012 Saving summary map: Misc_output/DDtotal_20120429.png - Number of accumulated degree-days on 04/29/2012 Saving summary map: Misc_output/DDtotal_20121225.png - Number of accumulated degree-days on 12/25/2012 Saving summary map: Misc_output/DDtotal_20120827.png - Number of accumulated degree-days on 08/27/2012 Done with DDtotal maps ### SUMMARY MAPS AND WEIGHTED RASTER OUTPUT: LIFESTAGE ### Stages: OA, E, L, P, A Saving raster brick: Misc_output/OWadult.tif - OWadult relative pop. size for all 13 dates Saving raster brick: Misc_output/Pupae.tif - Pupae relative pop. size for all 13 dates Saving raster brick: Misc_output/Larvae.tif - Larvae relative pop. size for all 13 dates Saving summary map: Misc_output/OWadult_20120229.png - OWadult relative pop. size on 02/29/2012 Saving summary map: Misc_output/OWadult_20120130.png - OWadult relative pop. size on 01/30/2012 Saving summary map: Misc_output/OWadult_20120330.png - OWadult relative pop. size on 03/30/2012 Saving summary map: Misc_output/Pupae_20120330.png - Pupae relative pop. size on 03/30/2012 Saving summary map: Misc_output/Pupae_20120229.png - Pupae relative pop. size on 02/29/2012 Saving summary map: Misc_output/Pupae_20120130.png - Pupae relative pop. size on 01/30/2012 Saving summary map: Misc_output/OWadult_20120529.png - OWadult relative pop. size on 05/29/2012 Saving summary map: Misc_output/Larvae_20120229.png - Larvae relative pop. size on 02/29/2012 Saving summary map: Misc_output/Larvae_20120130.png - Larvae relative pop. size on 01/30/2012 Saving summary map: Misc_output/OWadult_20120429.png - OWadult relative pop. size on 04/29/2012 Saving summary map: Misc_output/Larvae_20120330.png - Larvae relative pop. size on 03/30/2012 Saving summary map: Misc_output/OWadult_20120628.png - OWadult relative pop. size on 06/28/2012 Saving summary map: Misc_output/Pupae_20120628.png - Pupae relative pop. size on 06/28/2012 Saving summary map: Misc_output/Pupae_20120529.png - Pupae relative pop. size on 05/29/2012 Saving summary map: Misc_output/Pupae_20120429.png - Pupae relative pop. size on 04/29/2012 Saving summary map: Misc_output/OWadult_20120827.png - OWadult relative pop. size on 08/27/2012 Saving summary map: Misc_output/Larvae_20120529.png - Larvae relative pop. size on 05/29/2012 Saving summary map: Misc_output/Larvae_20120429.png - Larvae relative pop. size on 04/29/2012 Saving summary map: Misc_output/Larvae_20120628.png - Larvae relative pop. size on 06/28/2012 Saving raster brick: Misc_output/Adult.tif - Adult relative pop. size for 13 dates Saving summary map: Misc_output/OWadult_20120728.png - OWadult relative pop. size on 07/28/2012 Saving summary map: Misc_output/OWadult_20120926.png - OWadult relative pop. size on 09/26/2012 Saving summary map: Misc_output/Pupae_20120926.png - Pupae relative pop. size on 09/26/2012 Saving summary map: Misc_output/Pupae_20120827.png - Pupae relative pop. size on 08/27/2012 Saving summary map: Misc_output/OWadult_20121125.png - OWadult relative pop. size on 11/25/2012 Saving summary map: Misc_output/Pupae_20120728.png - Pupae relative pop. size on 07/28/2012 Saving summary map: Misc_output/Larvae_20120827.png - Larvae relative pop. size on 08/27/2012 Saving summary map: Misc_output/Larvae_20120926.png - Larvae relative pop. size on 09/26/2012 Saving summary map: Misc_output/OWadult_20121026.png - OWadult relative pop. size on 10/26/2012 Saving summary map: Misc_output/Larvae_20120728.png - Larvae relative pop. size on 07/28/2012 Saving summary map: Misc_output/OWadult_20121225.png - OWadult relative pop. size on 12/25/2012 Saving summary map: Misc_output/Adult_20120229.png - Adult relative pop. size on 02/29/2012 Saving summary map: Misc_output/Adult_20120130.png - Adult relative pop. size on 01/30/2012 Saving summary map: Misc_output/Pupae_20121225.png - Pupae relative pop. size on 12/25/2012 Saving raster brick: Misc_output/Egg.tif - Egg relative pop. size for all 13 dates Saving summary map: Misc_output/Pupae_20121125.png - Pupae relative pop. size on 11/25/2012 Saving summary map: Misc_output/Pupae_20121026.png - Pupae relative pop. size on 10/26/2012 Saving summary map: Misc_output/Larvae_20121125.png - Larvae relative pop. size on 11/25/2012 Saving summary map: Misc_output/Larvae_20121225.png - Larvae relative pop. size on 12/25/2012 Saving summary map: Misc_output/Larvae_20121026.png - Larvae relative pop. size on 10/26/2012 Saving summary map: Misc_output/OWadult_20121230.png - OWadult relative pop. size on 12/30/2012 Saving summary map: Misc_output/Adult_20120429.png - Adult relative pop. size on 04/29/2012 Saving summary map: Misc_output/Adult_20120330.png - Adult relative pop. size on 03/30/2012 Saving summary map: Misc_output/Egg_20120130.png - Egg relative pop. size on 01/30/2012 Saving summary map: Misc_output/Egg_20120330.png - Egg relative pop. size on 03/30/2012 Saving summary map: Misc_output/Pupae_20121230.png - Pupae relative pop. size on 12/30/2012 Saving summary map: Misc_output/Egg_20120229.png - Egg relative pop. size on 02/29/2012 Saving summary map: Misc_output/Larvae_20121230.png - Larvae relative pop. size on 12/30/2012 Saving summary map: Misc_output/Adult_20120628.png - Adult relative pop. size on 06/28/2012 Saving summary map: Misc_output/Adult_20120529.png - Adult relative pop. size on 05/29/2012 Saving summary map: Misc_output/Egg_20120429.png - Egg relative pop. size on 04/29/2012 Saving summary map: Misc_output/Egg_20120628.png - Egg relative pop. size on 06/28/2012 Saving summary map: Misc_output/Egg_20120529.png - Egg relative pop. size on 05/29/2012 Saving summary map: Misc_output/Adult_20120827.png - Adult relative pop. size on 08/27/2012 Saving summary map: Misc_output/Adult_20120728.png - Adult relative pop. size on 07/28/2012 Saving summary map: Misc_output/Egg_20120728.png - Egg relative pop. size on 07/28/2012 Saving summary map: Misc_output/Egg_20120926.png - Egg relative pop. size on 09/26/2012 Saving summary map: Misc_output/Adult_20121026.png - Adult relative pop. size on 10/26/2012 Saving summary map: Misc_output/Egg_20120827.png - Egg relative pop. size on 08/27/2012 Saving summary map: Misc_output/Adult_20120926.png - Adult relative pop. size on 09/26/2012 Saving summary map: Misc_output/Egg_20121026.png - Egg relative pop. size on 10/26/2012 Saving summary map: Misc_output/Egg_20121225.png - Egg relative pop. size on 12/25/2012 Saving summary map: Misc_output/Adult_20121225.png - Adult relative pop. size on 12/25/2012 Saving summary map: Misc_output/Egg_20121125.png - Egg relative pop. size on 11/25/2012 Saving summary map: Misc_output/Adult_20121125.png - Adult relative pop. size on 11/25/2012 Saving summary map: Misc_output/Egg_20121230.png - Egg relative pop. size on 12/30/2012 Saving summary map: Misc_output/Adult_20121230.png - Adult relative pop. size on 12/30/2012 Done with weighted raster outputs and summary maps for Lifestage ### WEIGHTED RASTER OUTPUT: NUMGEN FOR 11 GENERATIONS ### Saving raster brick: NumGen_3.tif - Gen. 3 for all 13 dates Saving raster brick: NumGen_6.tif - Gen. 6 for all 13 dates Saving raster brick: NumGen_4.tif - Gen. 4 for all 13 dates Saving raster brick: NumGen_2.tif - Gen. 2 for all 13 dates Saving raster brick: NumGen_0.tif - Gen. 0 for all 13 dates Saving raster brick: NumGen_9.tif - Gen. 9 for all 13 dates Saving raster brick: NumGen_8.tif - Gen. 8 for all 13 dates Saving raster brick: NumGen_1.tif - Gen. 1 for all 13 dates Saving raster brick: NumGen_7.tif - Gen. 7 for all 13 dates Saving raster brick: NumGen_5.tif - Gen. 5 for all 13 dates Saving raster brick: NumGen_11.tif - Gen. 11 for all 13 dates Saving raster brick: NumGen_10.tif - Gen. 10 for all 13 dates Done with weighted raster outputs for NumGen ### SUMMARY MAP OUTPUT: NUMGEN ### Saving summary map: NumGen_20120130.png - Numbers of generations on 01/30/2012 Saving summary map: NumGen_20120529.png - Numbers of generations on 05/29/2012 Saving summary map: NumGen_20120926.png - Numbers of generations on 09/26/2012 Saving summary map: NumGen_20121230.png - Numbers of generations on 12/30/2012 Saving summary map: NumGen_20120229.png - Numbers of generations on 02/29/2012 Saving summary map: NumGen_20120628.png - Numbers of generations on 06/28/2012 Saving summary map: NumGen_20121026.png - Numbers of generations on 10/26/2012 Saving summary map: NumGen_20120330.png - Numbers of generations on 03/30/2012 Saving summary map: NumGen_20120728.png - Numbers of generations on 07/28/2012 Saving summary map: NumGen_20121125.png - Numbers of generations on 11/25/2012 Saving summary map: NumGen_20120429.png - Numbers of generations on 04/29/2012 Saving summary map: NumGen_20120827.png - Numbers of generations on 08/27/2012 Saving summary map: NumGen_20121225.png - Numbers of generations on 12/25/2012 Done with summary maps for NumGen ### ANALYSIS: LIFESTAGE WITH NUMBER OF GENS. ### Saving raster brick: Mismatch_cohort1.tif Mismatch Saving raster brick: Mismatch_cohort2.tif Mismatch Saving raster brick: Mismatch_cohort6.tif Mismatch Saving raster brick: Mismatch_cohort7.tif Mismatch Saving raster brick: Mismatch_cohort4.tif Mismatch Saving raster brick: Mismatch_cohort3.tif Mismatch Saving raster brick: Mismatch_cohort5.tif Mismatch Saving raster brick: Diapause_all_weighted.tif Saving raster brick: Mismatch_all_weighted.tif Saving raster brick: AttVolt_all_weighted.tif Saving raster brick: FullGen_all_weighted.tif ### SUMMARY MAP OUTPUT - Diapause ###