#################################### ### Log file for DDRP cohorts v1 ### #################################### BASE DIR: /data/PRISM/ WORKING DIR: /data/PRISM/2017 EXISTING OUTPUT DIR: /home/httpd/html/dodtmp/811; removing all files PARAMETER AND SETTINGS SETUP: getting parameters to use in model Species params: /usr/local/dds/DDRP_DOD/spp_params/APH.params Reading params for species: APH Fullname: Aphalara itadori 2017 is not a leap year - ignoring 'keep_leap' parameter METADATA: creating metadata file for all inputs used in model Done writing metafile PRISM DATA PROCESSING Finished loading PRISM files for 365 days Creating template file for NORTHWEST Cropping tmax and tmin tiles for NORTHWEST Done processing PRISM data DAILY LOOP Sampling every 30 days between 20170101 and 20171231 Running daily loop for cohorts 1 2 3 4 5 Daily loop done (run time = 1.33 min) FINAL ANALYSES AND MAP PRODUCTION ### SUMMARY MAPS: DDTOTAL ### Saving summary map: Misc_output/DDtotal_20170130.png - Number of accumulated degree-days on 01/30/2017 Saving summary map: Misc_output/DDtotal_20170927.png - Number of accumulated degree-days on 09/27/2017 Saving summary map: Misc_output/DDtotal_20170530.png - Number of accumulated degree-days on 05/30/2017 Saving summary map: Misc_output/DDtotal_20171231.png - Number of accumulated degree-days on 12/31/2017 Saving summary map: Misc_output/DDtotal_20170629.png - Number of accumulated degree-days on 06/29/2017 Saving summary map: Misc_output/DDtotal_20170301.png - Number of accumulated degree-days on 03/01/2017 Saving summary map: Misc_output/DDtotal_20171027.png - Number of accumulated degree-days on 10/27/2017 Saving summary map: Misc_output/DDtotal_20170729.png - Number of accumulated degree-days on 07/29/2017 Saving summary map: Misc_output/DDtotal_20170331.png - Number of accumulated degree-days on 03/31/2017 Saving summary map: Misc_output/DDtotal_20171126.png - Number of accumulated degree-days on 11/26/2017 Saving summary map: Misc_output/DDtotal_20170828.png - Number of accumulated degree-days on 08/28/2017 Saving summary map: Misc_output/DDtotal_20170430.png - Number of accumulated degree-days on 04/30/2017 Saving summary map: Misc_output/DDtotal_20171226.png - Number of accumulated degree-days on 12/26/2017 Done with DDtotal maps ### SUMMARY MAPS AND WEIGHTED RASTER OUTPUT: LIFESTAGE ### Stages: OA, E, L, P, A Saving raster brick: Misc_output/Larvae.tif - Larvae relative pop. size for all 13 dates Saving raster brick: Misc_output/Egg.tif - Egg relative pop. size for all 13 dates Saving raster brick: Misc_output/Pupae.tif - Pupae relative pop. size for all 13 dates Saving raster brick: Misc_output/OWadult.tif - OWadult relative pop. size for all 13 dates Saving summary map: Misc_output/OWadult_20170301.png - OWadult relative pop. size on 03/01/2017 Saving summary map: Misc_output/Larvae_20170130.png - Larvae relative pop. size on 01/30/2017 Saving summary map: Misc_output/OWadult_20170130.png - OWadult relative pop. size on 01/30/2017 Saving summary map: Misc_output/Egg_20170331.png - Egg relative pop. size on 03/31/2017 Saving summary map: Misc_output/Larvae_20170301.png - Larvae relative pop. size on 03/01/2017 Saving summary map: Misc_output/Pupae_20170331.png - Pupae relative pop. size on 03/31/2017 Saving summary map: Misc_output/Larvae_20170331.png - Larvae relative pop. size on 03/31/2017 Saving summary map: Misc_output/Pupae_20170130.png - Pupae relative pop. size on 01/30/2017 Saving summary map: Misc_output/Egg_20170301.png - Egg relative pop. size on 03/01/2017 Saving summary map: Misc_output/OWadult_20170331.png - OWadult relative pop. size on 03/31/2017 Saving raster brick: Misc_output/Adult.tif - Adult relative pop. size for 13 dates Saving summary map: Misc_output/Egg_20170130.png - Egg relative pop. size on 01/30/2017 Saving summary map: Misc_output/Pupae_20170301.png - Pupae relative pop. size on 03/01/2017 Saving summary map: Misc_output/OWadult_20170530.png - OWadult relative pop. size on 05/30/2017 Saving summary map: Misc_output/OWadult_20170430.png - OWadult relative pop. size on 04/30/2017 Saving summary map: Misc_output/Egg_20170629.png - Egg relative pop. size on 06/29/2017 Saving summary map: Misc_output/Larvae_20170530.png - Larvae relative pop. size on 05/30/2017 Saving summary map: Misc_output/Larvae_20170629.png - Larvae relative pop. size on 06/29/2017 Saving summary map: Misc_output/Pupae_20170629.png - Pupae relative pop. size on 06/29/2017 Saving summary map: Misc_output/Egg_20170530.png - Egg relative pop. size on 05/30/2017 Saving summary map: Misc_output/Larvae_20170430.png - Larvae relative pop. size on 04/30/2017 Saving summary map: Misc_output/Pupae_20170430.png - Pupae relative pop. size on 04/30/2017 Saving summary map: Misc_output/Egg_20170430.png - Egg relative pop. size on 04/30/2017 Saving summary map: Misc_output/OWadult_20170629.png - OWadult relative pop. size on 06/29/2017 Saving summary map: Misc_output/Pupae_20170530.png - Pupae relative pop. size on 05/30/2017 Saving summary map: Misc_output/Adult_20170130.png - Adult relative pop. size on 01/30/2017 Saving summary map: Misc_output/Adult_20170301.png - Adult relative pop. size on 03/01/2017 Saving summary map: Misc_output/OWadult_20170828.png - OWadult relative pop. size on 08/28/2017 Saving summary map: Misc_output/Larvae_20170828.png - Larvae relative pop. size on 08/28/2017 Saving summary map: Misc_output/Pupae_20170927.png - Pupae relative pop. size on 09/27/2017 Saving summary map: Misc_output/Egg_20170828.png - Egg relative pop. size on 08/28/2017 Saving summary map: Misc_output/OWadult_20170729.png - OWadult relative pop. size on 07/29/2017 Saving summary map: Misc_output/Larvae_20170927.png - Larvae relative pop. size on 09/27/2017 Saving summary map: Misc_output/Egg_20170927.png - Egg relative pop. size on 09/27/2017 Saving summary map: Misc_output/Larvae_20170729.png - Larvae relative pop. size on 07/29/2017 Saving summary map: Misc_output/Egg_20170729.png - Egg relative pop. size on 07/29/2017 Saving summary map: Misc_output/Pupae_20170729.png - Pupae relative pop. size on 07/29/2017 Saving summary map: Misc_output/Adult_20170331.png - Adult relative pop. size on 03/31/2017 Saving summary map: Misc_output/Pupae_20170828.png - Pupae relative pop. size on 08/28/2017 Saving summary map: Misc_output/OWadult_20170927.png - OWadult relative pop. size on 09/27/2017 Saving summary map: Misc_output/Adult_20170430.png - Adult relative pop. size on 04/30/2017 Saving summary map: Misc_output/OWadult_20171126.png - OWadult relative pop. size on 11/26/2017 Saving summary map: Misc_output/Larvae_20171126.png - Larvae relative pop. size on 11/26/2017 Saving summary map: Misc_output/Egg_20171226.png - Egg relative pop. size on 12/26/2017 Saving summary map: Misc_output/Larvae_20171226.png - Larvae relative pop. size on 12/26/2017 Saving summary map: Misc_output/Pupae_20171226.png - Pupae relative pop. size on 12/26/2017 Saving summary map: Misc_output/OWadult_20171027.png - OWadult relative pop. size on 10/27/2017 Saving summary map: Misc_output/Egg_20171126.png - Egg relative pop. size on 11/26/2017 Saving summary map: Misc_output/Larvae_20171027.png - Larvae relative pop. size on 10/27/2017 Saving summary map: Misc_output/Pupae_20171027.png - Pupae relative pop. size on 10/27/2017 Saving summary map: Misc_output/Egg_20171027.png - Egg relative pop. size on 10/27/2017 Saving summary map: Misc_output/Pupae_20171126.png - Pupae relative pop. size on 11/26/2017 Saving summary map: Misc_output/Adult_20170530.png - Adult relative pop. size on 05/30/2017 Saving summary map: Misc_output/OWadult_20171226.png - OWadult relative pop. size on 12/26/2017 Saving summary map: Misc_output/Adult_20170629.png - Adult relative pop. size on 06/29/2017 Saving summary map: Misc_output/OWadult_20171231.png - OWadult relative pop. size on 12/31/2017 Saving summary map: Misc_output/Larvae_20171231.png - Larvae relative pop. size on 12/31/2017 Saving summary map: Misc_output/Pupae_20171231.png - Pupae relative pop. size on 12/31/2017 Saving summary map: Misc_output/Egg_20171231.png - Egg relative pop. size on 12/31/2017 Saving summary map: Misc_output/Adult_20170729.png - Adult relative pop. size on 07/29/2017 Saving summary map: Misc_output/Adult_20170828.png - Adult relative pop. size on 08/28/2017 Saving summary map: Misc_output/Adult_20170927.png - Adult relative pop. size on 09/27/2017 Saving summary map: Misc_output/Adult_20171027.png - Adult relative pop. size on 10/27/2017 Saving summary map: Misc_output/Adult_20171126.png - Adult relative pop. size on 11/26/2017 Saving summary map: Misc_output/Adult_20171226.png - Adult relative pop. size on 12/26/2017 Saving summary map: Misc_output/Adult_20171231.png - Adult relative pop. size on 12/31/2017 Done with summary maps for NumGen ### ANALYSIS: LIFESTAGE BY GENERATION ### Saving raster brick: Mismatch_cohort5.tif Mismatch Saving raster brick: Mismatch_cohort3.tif Mismatch Saving raster brick: Mismatch_cohort4.tif Mismatch Saving raster brick: Mismatch_cohort1.tif Mismatch Saving raster brick: Mismatch_cohort2.tif Mismatch Saving raster brick: Diapause_all_weighted.tif Saving raster brick: AttVolt_all_weighted.tif Saving raster brick: Mismatch_all_weighted.tif Saving raster brick: FullGen_all_weighted.tif ### SUMMARY MAP OUTPUT - Diapause ### ### Done w/ final analyses and map production ### Run time for analyses and map production = 1.34 min Deleting, renaming, and moving some remaining files Renamed all files for last day (20171231) to include APH in file name MODEL RUN DONE Run time for entire model = 3.06 min