#################################### ### Log file for DDRP cohorts v1 ### #################################### BASE DIR: /data/PRISM/ WORKING DIR: /data/PRISM/2017 EXISTING OUTPUT DIR: /home/httpd/html/dodtmp/2618; removing all files PARAMETER AND SETTINGS SETUP: getting parameters to use in model Species params: /usr/local/dds/DDRP_DOD/spp_params/GCA.params Reading params for species: GCA Fullname: Galerucella calmariensis 2017 is not a leap year - ignoring 'keep_leap' parameter METADATA: creating metadata file for all inputs used in model Done writing metafile PRISM DATA PROCESSING Finished loading PRISM files for 366 days Creating template file for CO Cropping tmax and tmin tiles for CO Done processing PRISM data DAILY LOOP Sampling every 30 days between 20170101 and 20171231 Running daily loop for cohorts 1 2 3 4 5 Daily loop done (run time = 0.37 min) FINAL ANALYSES AND MAP PRODUCTION ### SUMMARY MAPS: DDTOTAL ### Saving summary map: Misc_output/DDtotal_20170130.png - Number of accumulated degree-days on 01/30/2017 Saving summary map: Misc_output/DDtotal_20170529.png - Number of accumulated degree-days on 05/29/2017 Saving summary map: Misc_output/DDtotal_20171231.png - Number of accumulated degree-days on 12/31/2017 Saving summary map: Misc_output/DDtotal_20170926.png - Number of accumulated degree-days on 09/26/2017 Saving summary map: Misc_output/DDtotal_20170229.png - Number of accumulated degree-days on NA Saving summary map: Misc_output/DDtotal_20170628.png - Number of accumulated degree-days on 06/28/2017 Saving summary map: Misc_output/DDtotal_20171026.png - Number of accumulated degree-days on 10/26/2017 Saving summary map: Misc_output/DDtotal_20170330.png - Number of accumulated degree-days on 03/30/2017 Saving summary map: Misc_output/DDtotal_20171125.png - Number of accumulated degree-days on 11/25/2017 Saving summary map: Misc_output/DDtotal_20170728.png - Number of accumulated degree-days on 07/28/2017 Saving summary map: Misc_output/DDtotal_20170429.png - Number of accumulated degree-days on 04/29/2017 Saving summary map: Misc_output/DDtotal_20171225.png - Number of accumulated degree-days on 12/25/2017 Saving summary map: Misc_output/DDtotal_20170827.png - Number of accumulated degree-days on 08/27/2017 Done with DDtotal maps ### SUMMARY MAPS AND WEIGHTED RASTER OUTPUT: LIFESTAGE ### Stages: OA, E, L, P, A Saving raster brick: Misc_output/Pupae.tif - Pupae relative pop. size for all 13 dates Saving raster brick: Misc_output/Egg.tif - Egg relative pop. size for all 13 dates Saving raster brick: Misc_output/Larvae.tif - Larvae relative pop. size for all 13 dates Saving raster brick: Misc_output/OWadult.tif - OWadult relative pop. size for all 13 dates Saving summary map: Misc_output/Pupae_20170229.png - Pupae relative pop. size on NA Saving summary map: Misc_output/Pupae_20170130.png - Pupae relative pop. size on 01/30/2017 Saving summary map: Misc_output/Egg_20170130.png - Egg relative pop. size on 01/30/2017 Saving summary map: Misc_output/Egg_20170229.png - Egg relative pop. size on NA Saving summary map: Misc_output/Pupae_20170330.png - Pupae relative pop. size on 03/30/2017 Saving summary map: Misc_output/Egg_20170330.png - Egg relative pop. size on 03/30/2017 Saving summary map: Misc_output/OWadult_20170229.png - OWadult relative pop. size on NA Saving summary map: Misc_output/OWadult_20170130.png - OWadult relative pop. size on 01/30/2017 Saving summary map: Misc_output/Larvae_20170130.png - Larvae relative pop. size on 01/30/2017 Saving summary map: Misc_output/Larvae_20170229.png - Larvae relative pop. size on NA Saving summary map: Misc_output/Larvae_20170330.png - Larvae relative pop. size on 03/30/2017 Saving summary map: Misc_output/OWadult_20170330.png - OWadult relative pop. size on 03/30/2017 Saving raster brick: Misc_output/Adult.tif - Adult relative pop. size for 13 dates Saving summary map: Misc_output/Pupae_20170429.png - Pupae relative pop. size on 04/29/2017 Saving summary map: Misc_output/Pupae_20170529.png - Pupae relative pop. size on 05/29/2017 Saving summary map: Misc_output/Egg_20170429.png - Egg relative pop. size on 04/29/2017 Saving summary map: Misc_output/Egg_20170529.png - Egg relative pop. size on 05/29/2017 Saving summary map: Misc_output/OWadult_20170429.png - OWadult relative pop. size on 04/29/2017 Saving summary map: Misc_output/Pupae_20170628.png - Pupae relative pop. size on 06/28/2017 Saving summary map: Misc_output/OWadult_20170529.png - OWadult relative pop. size on 05/29/2017 Saving summary map: Misc_output/Egg_20170628.png - Egg relative pop. size on 06/28/2017 Saving summary map: Misc_output/Larvae_20170529.png - Larvae relative pop. size on 05/29/2017 Saving summary map: Misc_output/Larvae_20170429.png - Larvae relative pop. size on 04/29/2017 Saving summary map: Misc_output/Larvae_20170628.png - Larvae relative pop. size on 06/28/2017 Saving summary map: Misc_output/OWadult_20170628.png - OWadult relative pop. size on 06/28/2017 Saving summary map: Misc_output/Adult_20170130.png - Adult relative pop. size on 01/30/2017 Saving summary map: Misc_output/Adult_20170229.png - Adult relative pop. size on NA Saving summary map: Misc_output/Pupae_20170728.png - Pupae relative pop. size on 07/28/2017 Saving summary map: Misc_output/Egg_20170728.png - Egg relative pop. size on 07/28/2017 Saving summary map: Misc_output/Pupae_20170827.png - Pupae relative pop. size on 08/27/2017 Saving summary map: Misc_output/Egg_20170926.png - Egg relative pop. size on 09/26/2017 Saving summary map: Misc_output/OWadult_20170728.png - OWadult relative pop. size on 07/28/2017 Saving summary map: Misc_output/OWadult_20170827.png - OWadult relative pop. size on 08/27/2017 Saving summary map: Misc_output/Egg_20170827.png - Egg relative pop. size on 08/27/2017 Saving summary map: Misc_output/Pupae_20170926.png - Pupae relative pop. size on 09/26/2017 Saving summary map: Misc_output/Larvae_20170827.png - Larvae relative pop. size on 08/27/2017 Saving summary map: Misc_output/OWadult_20170926.png - OWadult relative pop. size on 09/26/2017 Saving summary map: Misc_output/Larvae_20170728.png - Larvae relative pop. size on 07/28/2017 Saving summary map: Misc_output/Larvae_20170926.png - Larvae relative pop. size on 09/26/2017 Saving summary map: Misc_output/Adult_20170429.png - Adult relative pop. size on 04/29/2017 Saving summary map: Misc_output/Adult_20170330.png - Adult relative pop. size on 03/30/2017 Saving summary map: Misc_output/Pupae_20171026.png - Pupae relative pop. size on 10/26/2017 Saving summary map: Misc_output/Egg_20171026.png - Egg relative pop. size on 10/26/2017 Saving summary map: Misc_output/Pupae_20171125.png - Pupae relative pop. size on 11/25/2017 Saving summary map: Misc_output/Egg_20171225.png - Egg relative pop. size on 12/25/2017 Saving summary map: Misc_output/OWadult_20171026.png - OWadult relative pop. size on 10/26/2017 Saving summary map: Misc_output/OWadult_20171125.png - OWadult relative pop. size on 11/25/2017 Saving summary map: Misc_output/Egg_20171125.png - Egg relative pop. size on 11/25/2017 Saving summary map: Misc_output/Larvae_20171125.png - Larvae relative pop. size on 11/25/2017 Saving summary map: Misc_output/Pupae_20171225.png - Pupae relative pop. size on 12/25/2017 Saving summary map: Misc_output/OWadult_20171225.png - OWadult relative pop. size on 12/25/2017 Saving summary map: Misc_output/Larvae_20171026.png - Larvae relative pop. size on 10/26/2017 Saving summary map: Misc_output/Larvae_20171225.png - Larvae relative pop. size on 12/25/2017 Saving summary map: Misc_output/Adult_20170628.png - Adult relative pop. size on 06/28/2017 Saving summary map: Misc_output/Adult_20170529.png - Adult relative pop. size on 05/29/2017 Saving summary map: Misc_output/OWadult_20171231.png - OWadult relative pop. size on 12/31/2017 Saving summary map: Misc_output/Egg_20171231.png - Egg relative pop. size on 12/31/2017 Saving summary map: Misc_output/Pupae_20171231.png - Pupae relative pop. size on 12/31/2017 Saving summary map: Misc_output/Larvae_20171231.png - Larvae relative pop. size on 12/31/2017 Saving summary map: Misc_output/Adult_20170827.png - Adult relative pop. size on 08/27/2017 Saving summary map: Misc_output/Adult_20170728.png - Adult relative pop. size on 07/28/2017 Saving summary map: Misc_output/Adult_20171026.png - Adult relative pop. size on 10/26/2017 Saving summary map: Misc_output/Adult_20170926.png - Adult relative pop. size on 09/26/2017 Saving summary map: Misc_output/Adult_20171225.png - Adult relative pop. size on 12/25/2017 Saving summary map: Misc_output/Adult_20171125.png - Adult relative pop. size on 11/25/2017 Saving summary map: Misc_output/Adult_20171231.png - Adult relative pop. size on 12/31/2017 Done with weighted raster outputs and summary maps for Lifestage ### WEIGHTED RASTER OUTPUT: NUMGEN FOR 6 GENERATIONS ### Saving raster brick: NumGen_4.tif - Gen. 4 for all 13 dates Saving raster brick: NumGen_0.tif - Gen. 0 for all 13 dates Saving raster brick: NumGen_1.tif - Gen. 1 for all 13 dates Saving raster brick: NumGen_3.tif - Gen. 3 for all 13 dates Saving raster brick: NumGen_5.tif - Gen. 5 for all 13 dates Saving raster brick: NumGen_2.tif - Gen. 2 for all 13 dates Saving raster brick: NumGen_6.tif - Gen. 6 for all 13 dates Done with weighted raster outputs for NumGen ### SUMMARY MAP OUTPUT: NUMGEN ### Saving summary map: NumGen_20170926.png - Numbers of generations on 09/26/2017 Saving summary map: NumGen_20170529.png - Numbers of generations on 05/29/2017 Saving summary map: NumGen_20171231.png - Numbers of generations on 12/31/2017 Saving summary map: NumGen_20170130.png - Numbers of generations on 01/30/2017 Saving summary map: NumGen_20171026.png - Numbers of generations on 10/26/2017 Saving summary map: NumGen_20170628.png - Numbers of generations on 06/28/2017 Saving summary map: NumGen_20170229.png - Numbers of generations on NA Saving summary map: NumGen_20171125.png - Numbers of generations on 11/25/2017 Saving summary map: NumGen_20170728.png - Numbers of generations on 07/28/2017 Saving summary map: NumGen_20170330.png - Numbers of generations on 03/30/2017 Saving summary map: NumGen_20171225.png - Numbers of generations on 12/25/2017 Saving summary map: NumGen_20170827.png - Numbers of generations on 08/27/2017 Saving summary map: NumGen_20170429.png - Numbers of generations on 04/29/2017 Done with summary maps for NumGen ### ANALYSIS: LIFESTAGE WITH NUMBER OF GENS. ### Saving raster brick: Mismatch_cohort2.tif Mismatch Saving raster brick: Mismatch_cohort3.tif Mismatch Saving raster brick: Mismatch_cohort5.tif Mismatch Saving raster brick: Mismatch_cohort1.tif Mismatch Saving raster brick: Mismatch_cohort4.tif Mismatch Saving raster brick: FullGen_all_weighted.tif Saving raster brick: AttVolt_all_weighted.tif Saving raster brick: Diapause_all_weighted.tif Saving raster brick: Mismatch_all_weighted.tif ### SUMMARY MAP OUTPUT - Diapause ###