#################################### ### Log file for DDRP v2 ### #################################### BASE DIR: /data/PRISM/ WORKING DIR: /data/PRISM/2019 EXISTING OUTPUT DIR: /home/httpd/html/dodtmp/1639; removing all files PARAMETER AND SETTINGS SETUP: getting parameters to use in model Species params: /usr/local/dds/DDRP_DOD/ddrp_v2/spp_params/GCA.params Reading params for species: GCA Fullname: Neogalerucella calmariensis METADATA: creating metadata file for all inputs used in model Done writing metadata file PRISM DATA PROCESSING Finished loading PRISM files for 365 days Creating template file for NORTHWEST Cropping tmax and tmin tiles for NORTHWEST Done processing PRISM data DAILY LOOP Sampling every 30 days between 20190101 and 20191231 Running daily loop for cohorts 1 2 3 4 5 6 Daily loop done (run time = 1.36 min) FINAL ANALYSES AND MAP PRODUCTION ### SUMMARY MAPS: DDTOTAL ### Saving summary map: Misc_output/DDtotal_20190331.png - Number of accumulated degree-days on 03/31/2019 Saving summary map: Misc_output/DDtotal_20190301.png - Number of accumulated degree-days on 03/01/2019 Saving summary map: Misc_output/DDtotal_20191126.png - Number of accumulated degree-days on 11/26/2019 Saving summary map: Misc_output/DDtotal_20190430.png - Number of accumulated degree-days on 04/30/2019 Saving summary map: Misc_output/DDtotal_20191027.png - Number of accumulated degree-days on 10/27/2019 Saving summary map: Misc_output/DDtotal_20190130.png - Number of accumulated degree-days on 01/30/2019 Saving summary map: Misc_output/DDtotal_20190629.png - Number of accumulated degree-days on 06/29/2019 Saving summary map: Misc_output/DDtotal_20191231.png - Number of accumulated degree-days on 12/31/2019 Saving summary map: Misc_output/DDtotal_20191226.png - Number of accumulated degree-days on 12/26/2019 Saving summary map: Misc_output/DDtotal_20190828.png - Number of accumulated degree-days on 08/28/2019 Saving summary map: Misc_output/DDtotal_20190729.png - Number of accumulated degree-days on 07/29/2019 Saving summary map: Misc_output/DDtotal_20190927.png - Number of accumulated degree-days on 09/27/2019 Saving summary map: Misc_output/DDtotal_20190530.png - Number of accumulated degree-days on 05/30/2019 Done with DDtotal maps ### RASTER AND SUMMARY MAP OUTPUTS: STAGE COUNT ### Saving summary map: StageCount_20190130.png - Stage count on 01/30/2019 Saving summary map: StageCount_20190301.png - Stage count on 03/01/2019 Saving summary map: StageCount_20190331.png - Stage count on 03/31/2019 Saving summary map: StageCount_20190430.png - Stage count on 04/30/2019 Saving summary map: StageCount_20190530.png - Stage count on 05/30/2019 Saving summary map: StageCount_20190629.png - Stage count on 06/29/2019 Saving summary map: StageCount_20190729.png - Stage count on 07/29/2019 Saving summary map: StageCount_20190828.png - Stage count on 08/28/2019 Saving summary map: StageCount_20191231.png - Stage count on 12/31/2019 Saving summary map: StageCount_20191126.png - Stage count on 11/26/2019 Saving summary map: StageCount_20190927.png - Stage count on 09/27/2019 Saving summary map: StageCount_20191027.png - Stage count on 10/27/2019 Saving summary map: StageCount_20191226.png - Stage count on 12/26/2019 Done with raster and summary map outputs for StageCount ### RASTER AND SUMMARY MAP OUTPUTS: PEST EVENT MAPS ### Saving raster: Avg_PEMa1_20191231.tif - Avg. date of 1st gen. egg laying Saving raster: Avg_PEMa2_20191231.tif - Avg. date of 2nd gen. egg laying Saving raster: Avg_PEMa0_20191231.tif - Avg. date of OW gen. Adult emerges (pre-oviposition) Saving summary map: Avg_PEMa2_20191231.png - Avg. date of 2nd gen. egg laying Saving raster: Earliest_PEMa2_20191231.tif - Earliest date of 2nd gen. egg laying Saving summary map: Avg_PEMa1_20191231.png - Avg. date of 1st gen. egg laying Saving raster: Earliest_PEMa1_20191231.tif - Earliest date of 1st gen. egg laying Saving summary map: Earliest_PEMa2_20191231.png - Earliest date of 2nd gen. egg laying Saving summary map: Avg_PEMa0_20191231.png - Avg. date of OW gen. Adult emerges (pre-oviposition) Saving raster: Earliest_PEMa0_20191231.tif - Earliest date of OW gen. Adult emerges (pre-oviposition) Saving summary map: Earliest_PEMa1_20191231.png - Earliest date of 1st gen. egg laying Saving summary map: Earliest_PEMa0_20191231.png - Earliest date of OW gen. Adult emerges (pre-oviposition) Done with Pest Event Maps ### WEIGHTED RASTER AND SUMMARY MAP OUTPUTS: LIFESTAGE ### Stages: OA, E, L, P, A Saving raster brick: Misc_output/Pupae.tif - Pupae relative pop. size for all 13 dates Saving raster brick: Misc_output/OWadult.tif - OWadult relative pop. size for all 13 dates Saving raster brick: Misc_output/Larvae.tif - Larvae relative pop. size for all 13 dates Saving raster brick: Misc_output/Egg.tif - Egg relative pop. size for all 13 dates Saving summary map: Misc_output/Pupae_20190130.png - Pupae relative pop. size on 01/30/2019 Saving summary map: Misc_output/Larvae_20190130.png - Larvae relative pop. size on 01/30/2019 Saving summary map: Misc_output/Egg_20190130.png - Egg relative pop. size on 01/30/2019 Saving summary map: Misc_output/OWadult_20190130.png - OWadult relative pop. size on 01/30/2019 Saving raster brick: Misc_output/Adult.tif - Adult relative pop. size for 13 dates Saving summary map: Misc_output/Pupae_20190301.png - Pupae relative pop. size on 03/01/2019 Saving summary map: Misc_output/Larvae_20190301.png - Larvae relative pop. size on 03/01/2019 Saving summary map: Misc_output/Egg_20190301.png - Egg relative pop. size on 03/01/2019 Saving summary map: Misc_output/Adult_20190130.png - Adult relative pop. size on 01/30/2019 Saving summary map: Misc_output/Pupae_20190331.png - Pupae relative pop. size on 03/31/2019 Saving summary map: Misc_output/OWadult_20190301.png - OWadult relative pop. size on 03/01/2019 Saving summary map: Misc_output/Egg_20190331.png - Egg relative pop. size on 03/31/2019 Saving summary map: Misc_output/Larvae_20190331.png - Larvae relative pop. size on 03/31/2019 Saving summary map: Misc_output/Pupae_20190430.png - Pupae relative pop. size on 04/30/2019 Saving summary map: Misc_output/OWadult_20190331.png - OWadult relative pop. size on 03/31/2019 Saving summary map: Misc_output/Larvae_20190430.png - Larvae relative pop. size on 04/30/2019 Saving summary map: Misc_output/Egg_20190430.png - Egg relative pop. size on 04/30/2019 Saving summary map: Misc_output/Pupae_20190530.png - Pupae relative pop. size on 05/30/2019 Saving summary map: Misc_output/Adult_20190301.png - Adult relative pop. size on 03/01/2019 Saving summary map: Misc_output/OWadult_20190430.png - OWadult relative pop. size on 04/30/2019 Saving summary map: Misc_output/Larvae_20190530.png - Larvae relative pop. size on 05/30/2019 Saving summary map: Misc_output/Egg_20190530.png - Egg relative pop. size on 05/30/2019 Saving summary map: Misc_output/Pupae_20190629.png - Pupae relative pop. size on 06/29/2019 Saving summary map: Misc_output/OWadult_20190530.png - OWadult relative pop. size on 05/30/2019 Saving summary map: Misc_output/Adult_20190331.png - Adult relative pop. size on 03/31/2019 Saving summary map: Misc_output/Egg_20190629.png - Egg relative pop. size on 06/29/2019 Saving summary map: Misc_output/Larvae_20190629.png - Larvae relative pop. size on 06/29/2019 Saving summary map: Misc_output/Pupae_20190729.png - Pupae relative pop. size on 07/29/2019 Saving summary map: Misc_output/OWadult_20190629.png - OWadult relative pop. size on 06/29/2019 Saving summary map: Misc_output/Egg_20190729.png - Egg relative pop. size on 07/29/2019 Saving summary map: Misc_output/Larvae_20190729.png - Larvae relative pop. size on 07/29/2019 Saving summary map: Misc_output/Pupae_20190828.png - Pupae relative pop. size on 08/28/2019 Saving summary map: Misc_output/Adult_20190430.png - Adult relative pop. size on 04/30/2019 Saving summary map: Misc_output/OWadult_20190729.png - OWadult relative pop. size on 07/29/2019 Saving summary map: Misc_output/Egg_20190828.png - Egg relative pop. size on 08/28/2019 Saving summary map: Misc_output/Larvae_20190828.png - Larvae relative pop. size on 08/28/2019 Saving summary map: Misc_output/Pupae_20190927.png - Pupae relative pop. size on 09/27/2019 Saving summary map: Misc_output/Adult_20190530.png - Adult relative pop. size on 05/30/2019 Saving summary map: Misc_output/Egg_20190927.png - Egg relative pop. size on 09/27/2019 Saving summary map: Misc_output/OWadult_20190828.png - OWadult relative pop. size on 08/28/2019 Saving summary map: Misc_output/Larvae_20190927.png - Larvae relative pop. size on 09/27/2019 Saving summary map: Misc_output/Pupae_20191027.png - Pupae relative pop. size on 10/27/2019 Saving summary map: Misc_output/Adult_20190629.png - Adult relative pop. size on 06/29/2019 Saving summary map: Misc_output/Egg_20191027.png - Egg relative pop. size on 10/27/2019 Saving summary map: Misc_output/OWadult_20190927.png - OWadult relative pop. size on 09/27/2019 Saving summary map: Misc_output/Larvae_20191027.png - Larvae relative pop. size on 10/27/2019 Saving summary map: Misc_output/Pupae_20191126.png - Pupae relative pop. size on 11/26/2019 Saving summary map: Misc_output/Egg_20191126.png - Egg relative pop. size on 11/26/2019 Saving summary map: Misc_output/Adult_20190729.png - Adult relative pop. size on 07/29/2019 Saving summary map: Misc_output/OWadult_20191027.png - OWadult relative pop. size on 10/27/2019 Saving summary map: Misc_output/Larvae_20191126.png - Larvae relative pop. size on 11/26/2019 Saving summary map: Misc_output/Pupae_20191226.png - Pupae relative pop. size on 12/26/2019 Saving summary map: Misc_output/OWadult_20191126.png - OWadult relative pop. size on 11/26/2019 Saving summary map: Misc_output/Adult_20190828.png - Adult relative pop. size on 08/28/2019 Saving summary map: Misc_output/Egg_20191226.png - Egg relative pop. size on 12/26/2019 Saving summary map: Misc_output/Pupae_20191231.png - Pupae relative pop. size on 12/31/2019 Saving summary map: Misc_output/Larvae_20191226.png - Larvae relative pop. size on 12/26/2019 Saving summary map: Misc_output/OWadult_20191226.png - OWadult relative pop. size on 12/26/2019 Saving summary map: Misc_output/Egg_20191231.png - Egg relative pop. size on 12/31/2019 Saving summary map: Misc_output/Adult_20190927.png - Adult relative pop. size on 09/27/2019 Saving summary map: Misc_output/Larvae_20191231.png - Larvae relative pop. size on 12/31/2019 Saving summary map: Misc_output/OWadult_20191231.png - OWadult relative pop. size on 12/31/2019 Saving summary map: Misc_output/Adult_20191027.png - Adult relative pop. size on 10/27/2019 Saving summary map: Misc_output/Adult_20191126.png - Adult relative pop. size on 11/26/2019 Saving summary map: Misc_output/Adult_20191226.png - Adult relative pop. size on 12/26/2019 Saving summary map: Misc_output/Adult_20191231.png - Adult relative pop. size on 12/31/2019 Done with weighted raster summary map outputs for Lifestage ### WEIGHTED RASTER OUTPUT: NUMGEN ### Saving raster brick: Gen_0_cohort3.tif - Gen. 0 for all 13 dates Saving raster brick: Gen_0_cohort1.tif - Gen. 0 for all 13 dates Saving raster brick: Gen_0_cohort4.tif - Gen. 0 for all 13 dates Saving raster brick: Gen_0_cohort2.tif - Gen. 0 for all 13 dates Saving raster brick: Gen_0_cohort6.tif - Gen. 0 for all 13 dates Saving raster brick: Gen_0_cohort5.tif - Gen. 0 for all 13 dates Saving raster brick: Gen_1_cohort1.tif - Gen. 1 for all 13 dates Saving raster brick: Gen_1_cohort2.tif - Gen. 1 for all 13 dates Saving raster brick: Gen_1_cohort3.tif - Gen. 1 for all 13 dates Saving raster brick: Gen_1_cohort4.tif - Gen. 1 for all 13 dates Saving raster brick: Gen_1_cohort5.tif - Gen. 1 for all 13 dates Saving raster brick: Gen_1_cohort6.tif - Gen. 1 for all 13 dates Saving raster brick: Gen_2_cohort1.tif - Gen. 2 for all 13 dates Saving raster brick: Gen_2_cohort2.tif - Gen. 2 for all 13 dates Saving raster brick: Gen_2_cohort3.tif - Gen. 2 for all 13 dates Saving raster brick: Gen_2_cohort4.tif - Gen. 2 for all 13 dates Saving raster brick: Gen_2_cohort5.tif - Gen. 2 for all 13 dates Saving raster brick: Gen_2_cohort6.tif - Gen. 2 for all 13 dates Saving raster brick: Gen_3_cohort1.tif - Gen. 3 for all 13 dates Saving raster brick: Gen_3_cohort2.tif - Gen. 3 for all 13 dates Saving raster brick: Gen_3_cohort3.tif - Gen. 3 for all 13 dates Saving raster brick: Gen_3_cohort4.tif - Gen. 3 for all 13 dates Saving raster brick: Gen_3_cohort5.tif - Gen. 3 for all 13 dates Saving raster brick: Gen_3_cohort6.tif - Gen. 3 for all 13 dates Saving raster brick: Gen_4_cohort1.tif - Gen. 4 for all 13 dates Saving raster brick: Gen_4_cohort2.tif - Gen. 4 for all 13 dates Saving raster brick: Gen_4_cohort4.tif - Gen. 4 for all 13 dates Saving raster brick: Gen_4_cohort3.tif - Gen. 4 for all 13 dates Saving raster brick: Gen_4_cohort5.tif - Gen. 4 for all 13 dates Saving raster brick: Gen_4_cohort6.tif - Gen. 4 for all 13 dates Saving raster brick: Gen_5_cohort1.tif - Gen. 5 for all 13 dates Saving raster brick: Gen_5_cohort2.tif - Gen. 5 for all 13 dates Saving raster brick: Gen_5_cohort3.tif - Gen. 5 for all 13 dates Saving raster brick: Gen_5_cohort4.tif - Gen. 5 for all 13 dates Saving raster brick: Gen_5_cohort5.tif - Gen. 5 for all 13 dates Saving raster brick: Gen_5_cohort6.tif - Gen. 5 for all 13 dates Saving raster brick: Gen_6_cohort1.tif - Gen. 6 for all 13 dates Saving raster brick: Gen_6_cohort2.tif - Gen. 6 for all 13 dates Saving raster brick: Gen_6_cohort3.tif - Gen. 6 for all 13 dates Saving raster brick: Gen_6_cohort4.tif - Gen. 6 for all 13 dates Saving raster brick: Gen_6_cohort5.tif - Gen. 6 for all 13 dates Saving raster brick: Gen_6_cohort6.tif - Gen. 6 for all 13 dates Saving raster brick: Misc_output/Gen_2.tif - Gen. 2 for all 13 dates Saving raster brick: Misc_output/Gen_0.tif - Gen. 0 for all 13 dates Saving raster brick: Misc_output/Gen_1.tif - Gen. 1 for all 13 dates Saving raster brick: Misc_output/Gen_4.tif - Gen. 4 for all 13 dates Saving raster brick: Misc_output/Gen_3.tif - Gen. 3 for all 13 dates Saving raster brick: Misc_output/Gen_5.tif - Gen. 5 for all 13 dates Saving raster brick: Misc_output/Gen_6.tif - Gen. 6 for all 13 dates Done with weighted raster outputs for NumGen ### SUMMARY MAP OUTPUT: NUMGEN ### Saving summary map: NumGen_20190430.png - Numbers of generations on 04/30/2019 Saving summary map: NumGen_20190729.png - Numbers of generations on 07/29/2019 Saving summary map: NumGen_20190130.png - Numbers of generations on 01/30/2019 Saving summary map: NumGen_20191027.png - Numbers of generations on 10/27/2019 Saving summary map: NumGen_20190530.png - Numbers of generations on 05/30/2019 Saving summary map: NumGen_20190301.png - Numbers of generations on 03/01/2019 Saving summary map: NumGen_20190828.png - Numbers of generations on 08/28/2019 Saving summary map: NumGen_20191126.png - Numbers of generations on 11/26/2019 Saving summary map: NumGen_20190331.png - Numbers of generations on 03/31/2019 Saving summary map: NumGen_20190629.png - Numbers of generations on 06/29/2019 Saving summary map: NumGen_20190927.png - Numbers of generations on 09/27/2019 Saving summary map: NumGen_20191226.png - Numbers of generations on 12/26/2019 Saving summary map: NumGen_20191231.png - Numbers of generations on 12/31/2019 Done with summary maps for NumGen ### ANALYSIS: LIFESTAGE WITH NUMBER OF GENS. ### Saving raster brick: Mismatch_cohort3.tif Mismatch Saving raster brick: Mismatch_cohort6.tif Mismatch Saving raster brick: Mismatch_cohort1.tif Mismatch Saving raster brick: Mismatch_cohort4.tif Mismatch Saving raster brick: Mismatch_cohort2.tif Mismatch Saving raster brick: Mismatch_cohort5.tif Mismatch Saving raster brick: Diapause_all_weighted.tif Saving raster brick: Mismatch_all_weighted.tif Saving raster brick: AttVolt_all_weighted.tif Saving raster brick: FullVolt_all_weighted.tif ### SUMMARY MAP OUTPUT - Diapause ### Replacing older generation vals with newer gen. vals in areas of overlap Done Assigning a generation number to pixels in the Adult raster brick Done ### SUMMARY MAP OUTPUT: LIFESTAGE W/ NO. OF GENS. ### Saving summary map: Misc_output/Adult_byGen_20190301.png - Relative pop. size of adults for each gen. on 03/01/2019 Saving summary map: Misc_output/Adult_byGen_20190130.png - Relative pop. size of adults for each gen. on 01/30/2019 Saving summary map: Misc_output/Adult_byGen_20190530.png - Relative pop. size of adults for each gen. on 05/30/2019 Saving summary map: Misc_output/Adult_byGen_20190331.png - Relative pop. size of adults for each gen. on 03/31/2019 Saving summary map: Misc_output/Adult_byGen_20190430.png - Relative pop. size of adults for each gen. on 04/30/2019 Saving summary map: Misc_output/Adult_byGen_20190629.png - Relative pop. size of adults for each gen. on 06/29/2019 Saving summary map: Misc_output/Adult_byGen_20190828.png - Relative pop. size of adults for each gen. on 08/28/2019 Saving summary map: Misc_output/Adult_byGen_20190729.png - Relative pop. size of adults for each gen. on 07/29/2019 Saving summary map: Misc_output/Adult_byGen_20190927.png - Relative pop. size of adults for each gen. on 09/27/2019 Saving summary map: Misc_output/Adult_byGen_20191027.png - Relative pop. size of adults for each gen. on 10/27/2019 Saving summary map: Misc_output/Adult_byGen_20191126.png - Relative pop. size of adults for each gen. on 11/26/2019 Saving summary map: Misc_output/Adult_byGen_20191226.png - Relative pop. size of adults for each gen. on 12/26/2019 Saving summary map: Misc_output/Adult_byGen_20191231.png - Relative pop. size of adults for each gen. on 12/31/2019 Done with Lifestage with NumGen summary maps ### Done w/ final analyses and map production ### Run time for analyses and map production = 4.71 min Deleting, renaming, and moving miscellaneous files Renamed all final PNG files to include GCA in file name MODEL RUN DONE Run time for entire model = 6.48 min